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How does fluorescence microscopy work?

Published in Microscopy 3 mins read

Fluorescence microscopy uses a high-intensity light source to excite fluorescent molecules (fluorophores) within a sample. These fluorophores then emit light of a longer wavelength, which is used to create a magnified image.

Here's a more detailed breakdown of the process:

1. Excitation Light Source

  • High-Intensity Light: A powerful light source, such as a mercury or xenon arc lamp, or a laser, provides the initial excitation light.
  • Specific Wavelengths: The light source emits a broad spectrum of light, but only specific wavelengths are used to excite the fluorophores.

2. Excitation Filter

  • Selecting Excitation Wavelengths: An excitation filter is used to select the specific wavelengths of light that will excite the fluorophore being studied. This filter blocks other wavelengths, ensuring that only the desired excitation light reaches the sample.

3. Sample Illumination

  • Fluorophores: The sample contains fluorophores, which are molecules that absorb light at one wavelength and emit light at a longer wavelength. These fluorophores can be intrinsic to the sample or introduced through staining or genetic engineering.
  • Excitation: When the excitation light hits the fluorophores, they absorb the energy and enter an excited state.

4. Emission

  • Fluorescence Emission: After a brief period in the excited state, the fluorophores return to their ground state, releasing the absorbed energy as light. This emitted light is at a longer wavelength (lower energy) than the excitation light due to energy loss during the excited state. This difference in wavelength is called the Stokes shift.

5. Emission Filter

  • Selecting Emission Wavelengths: An emission filter is used to select the specific wavelengths of the emitted fluorescence light. This filter blocks any remaining excitation light and other unwanted light, ensuring that only the fluorescence signal reaches the detector.

6. Dichroic Mirror (or Beamsplitter)

  • Separating Excitation and Emission Light: A dichroic mirror (or beamsplitter) reflects the excitation light towards the sample and transmits the emitted fluorescence light towards the detector. This allows for efficient separation of the excitation and emission light paths.

7. Detection and Image Formation

  • Detector: The emitted fluorescence light passes through the emission filter and is collected by a detector, such as a camera or photomultiplier tube (PMT).
  • Image Processing: The detector converts the light signal into an electronic signal, which is then processed to create a magnified image of the sample.

Table Summarizing Key Components

Component Function
Light Source Provides high-intensity light for excitation.
Excitation Filter Selects the specific wavelengths of light to excite the fluorophores.
Dichroic Mirror Reflects excitation light and transmits emission light.
Emission Filter Selects the specific wavelengths of emitted fluorescence light.
Detector Converts the fluorescence signal into an electronic signal for image formation.

Advantages of Fluorescence Microscopy

  • High Specificity: Fluorophores can be targeted to specific structures or molecules within the sample, allowing for highly specific imaging.
  • High Sensitivity: Fluorescence microscopy can detect even small amounts of fluorescence signal.
  • Multiple Labeling: Different fluorophores with different excitation and emission wavelengths can be used to label multiple structures simultaneously.

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